在Linux集群上安装R`preview`包：编译问题？

我希望测试R的性能,更具体地说是在具有Intel Xeon Phi协处理器的HPC集群的预测包中的一些例程.据我所知,系统管理员按照英特尔网站上的说明从源代码构建了R / 3.2.5： https://software.intel.com/en-us/articles/build-r-301-with-intel-c-compiler-and-intel-mkl-on-linux

因此R工作,包括devtools,data.table,dplyr,ggplot2,Rcpp,RcppArmadillo的软件包的安装可以使用install.packages在R会话中执行,以安装到本地用户特定的库.我提到这些包的原因是它们都需要某种形式的编译,因此我需要在我的.bashrc文件中包含行模块load intel / 15.2.164来加载编译器.

但是,当我来安装预测包时,我失败了.有一个很长的文本输出流(见下文),但总的来说,似乎与编译器相关的某些内容失败了：

/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(115): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value + __y._M_value;

我担心我对编译软件和管理/安装知之甚少：我之前在Mac或大学Linux集群上从未发生过这些问题.

> install.packages("forecast")
Installing package into '/gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5'
(as 'lib' is unspecified)
trying URL 'https://www.stats.bris.ac.uk/R/src/contrib/forecast_7.1.tar.gz'
Content type 'application/x-gzip' length 196896 bytes (192 KB)
==================================================
downloaded 192 KB

* installing *source* package 'forecast' ...
** package 'forecast' successfully unpacked and MD5 sums checked
** libs
icpc -I/gpfs/stfc/local/apps/intel/R/3.2.5/lib64/R/include -DNDEBUG  -I/gpfs/stfc/local/apps/intel/utilities/include -I"/gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include" -I"/gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/RcppArmadillo/include"   -fpic  -O2  -c calcBATS.cpp -o calcBATS.o
icpc -I/gpfs/stfc/local/apps/intel/R/3.2.5/lib64/R/include -DNDEBUG  -I/gpfs/stfc/local/apps/intel/utilities/include -I"/gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include" -I"/gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/RcppArmadillo/include"   -fpic  -O2  -c calcTBATS.cpp -o calcTBATS.o
icpc -I/gpfs/stfc/local/apps/intel/R/3.2.5/lib64/R/include -DNDEBUG  -I/gpfs/stfc/local/apps/intel/utilities/include -I"/gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include" -I"/gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/RcppArmadillo/include"   -fpic  -O2  -c etsTargetFunction.cpp -o etsTargetFunction.o
In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/Rcpp.h(27),from etsTargetFunction.h(3),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(69): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          _M_value = __z._M_value;
                         ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(77): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          _M_value = __z._M_value;
                         ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(115): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value + __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(115): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value + __y._M_value;
                                    ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(120): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value - __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(120): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value - __y._M_value;
                                    ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(125): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value * __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(125): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value * __y._M_value;
                                    ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(130): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value / __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(130): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value / __y._M_value;
                                    ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(134): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return -__x._M_value;
                      ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(141): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value == __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(141): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value == __y._M_value;
                                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(146): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value != __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(146): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value != __y._M_value;
                                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(150): error #308: member "std::complex<float>::_M_value" (declared at line 1157 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return ~__z._M_value;
                      ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(187): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value + __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(187): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value + __y._M_value;
                                    ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(192): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value - __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(192): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value - __y._M_value;
                                    ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(197): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value * __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(197): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value * __y._M_value;
                                    ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(202): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value / __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(202): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value / __y._M_value;
                                    ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(206): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return -__x._M_value;
                      ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(211): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value == __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(211): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value == __y._M_value;
                                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(216): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value != __y._M_value;
                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(216): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return __x._M_value != __y._M_value;
                                     ^

In file included from /gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/Rcpp/include/RcppCommon.h(64),from etsTargetFunction.cpp(7):
/gpfs/stfc/local/apps/intel/intel_cs/2015.2.164/composer_xe_2015.2.164/compiler/include/complex(220): error #308: member "std::complex<double>::_M_value" (declared at line 1302 of "/usr/include/c++/4.4.7/complex") is inaccessible
          return ~__z._M_value;
                      ^

compilation aborted for etsTargetFunction.cpp (code 2)
make: *** [etsTargetFunction.o] Error 2
ERROR: compilation failed for package 'forecast'
* removing '/gpfs/stfc/local/HCPhi012/mjw01/mjw93-mjw01/library/R/3.2.5/forecast'

The downloaded source packages are in
    '/tmp/RtmppswtIw/downloaded_packages'
Warning message:
In install.packages("forecast") :
  installation of package 'forecast' had non-zero exit status

似乎关于R和Xeon Phi协处理器以及关于StackOverflow的单个问题的文档很少,但仍未得到答复：R Parallel Processing with Xeon Phi,minimal code changes?

如果有人能指出我正确的方向,我将非常感激.非常感谢.

CXXFLAGS = -diag-disable 308