基因数据处理6之BWA_MEM无法分配内存
发布时间：2020-12-14 02:00:14 所属栏目：大数据 来源：网络整理
导读：基因数据处理之BWA_MEM无法分配内存： ? ? ?建立BWA索引的时候内存不足，现在用BWA-MEM又内存不足，真耗内存 hadoop@Mcnode1:~/cloud/adam/xubo/data/data_HDFS/GRCH38/GCA_000001405.15_GRCh38/test20160310$ bwa mem GCA_000001405.15_GRCh38/GCA_00000140
|
基因数据处理之BWA_MEM无法分配内存： ? ? ?建立BWA索引的时候内存不足，现在用BWA-MEM又内存不足，真耗内存 hadoop@Mcnode1:~/cloud/adam/xubo/data/data_HDFS/GRCH38/GCA_000001405.15_GRCh38/test20160310$ bwa mem GCA_000001405.15_GRCh38/GCA_000001405.15_GRCh38_full_analysis_set.fna SRR003161.fastq >SRR003161b.sam [bwt_restore_sa] Failed to allocate 1604728968 bytes at bwt.c line 436: Cannot allocate memory? ? ?昨天晚上跑的直接被killed...... ? ?之后截的： 14:24:47 memtot memfree buffers cached slabmem swptot swpfree _mem_ 14:24:47 3944M 2442M 6M 56M 64M 6133M 2071M 14:24:48 3944M 2442M 7M 56M 64M 6133M 2071M之前跑的： 14:12:03 3944M 132M 10M 212M 68M 6133M 2478M 14:12:04 3944M 128M 10M 212M 68M 6133M 2478M 14:12:05 3944M 131M 10M 205M 68M 6133M 2478M 14:12:06 3944M 128M 10M 204M 68M 6133M 2479M 14:12:07 3944M 129M 10M 200M 68M 6133M 2479M 14:12:08 3944M 130M 10M 195M 68M 6133M 2479M 14:12:09 3944M 130M 10M 191M 68M 6133M 2479M 14:12:10 3944M 129M 10M 187M 68M 6133M 2479M 14:12:11 3944M 129M 10M 183M 68M 6133M 2479M 14:12:12 3944M 129M 10M 180M 68M 6133M 2479M 14:12:13 3944M 129M 10M 175M 68M 6133M 2479M 14:12:14 3944M 129M 10M 171M 68M 6133M 2479M 14:12:15 3944M 129M 10M 167M 68M 6133M 2479M 14:12:16 3944M 124M 10M 169M 68M 6133M 2479M 14:12:17 3944M 126M 10M 164M 68M 6133M 2480M 14:12:18 3944M 126M 10M 161M 68M 6133M 2480M 14:12:19 3944M 125M 10M 157M 68M 6133M 2480M 14:12:20 3944M 125M 10M 153M 68M 6133M 2480M 14:12:21 3944M 125M 10M 149M 68M 6133M 2480M 14:12:22 3944M 124M 10M 145M 68M 6133M 2480M 14:12:23 3944M 123M 10M 142M 68M 6133M 2480M 14:12:24 3944M 122M 10M 139M 68M 6133M 2480M 14:12:25 3944M 121M 10M 136M 68M 6133M 2480M 14:12:26 3944M 121M 14:21:04 3944M 130M 3M 13M 62M 6133M 1178M 14:21:05 3944M 134M 3M 15M 62M 6133M 1172M 14:21:06 3944M 121M 3M 23M 62M 6133M 1172M 14:21:07 3944M 110M 4M 29M 62M 6133M 1172M 14:21:08 3944M 113M 2M 23M 62M 6133M 1172M 14:21:09 3944M 115M 1M 15M 62M 6133M 1170M 14:21:10 3944M 116M 1M 16M 62M 6133M 1162M 14:21:11 3944M 123M 1M 15M 62M 6133M 1162M 14:21:12 3944M 105M 1M 25M 62M 6133M 1162M 14:21:13 3944M 130M 0M 16M 62M 6133M 1155M 14:21:14 3944M 131M 1M 17M 62M 6133M 1151M 14:21:15 3944M 137M 1M 18M 62M 6133M 1143M 14:21:16 3944M 140M 1M 19M 62M 6133M 1136M 14:21:17 3944M 147M 1M 21M 62M 6133M 1127M 14:21:18 3944M 145M 1M 23M 62M 6133M 1126M 14:21:19 3944M 2576M 2M 24M 62M 6133M 1975M 14:21:20 3944M 2575M 2M 25M 62M 6133M 1975M 14:21:21 3944M 2574M 3M 25M 63M 6133M 1975M 14:21:22 3944M 2573M 3M 26M 63M 6133M 1975M 14:21:23 3944M 2572M 3M 26M 63M 6133M 1975M 14:21:24 3944M 2570M 4M 27M 63M 6133M 1975M 14:21:25 3944M 2568M 4M 29M 63M 6133M 1975M 不是还有内存吗？为什么提示：？ [bwt_restore_sa] Failed to allocate 1604728968 bytes at bwt.c line 436: Cannot allocate memory （编辑：李大同） 【声明】本站内容均来自网络，其相关言论仅代表作者个人观点，不代表本站立场。若无意侵犯到您的权利，请及时与联系站长删除相关内容! |