基因数据处理52之cs-bwamem集群版运行（1千万条100bp的reads）
发布时间：2020-12-14 01:46:28 所属栏目：大数据 来源：网络整理
导读：1.art生成模拟序列： art_illumina -ss HS20 -i GRCH38BWAindex/GRCH38chr1L3556522 . fna -l 100 -c 10000000 -o g38L100c10000000Nhs20 2.上传到hdfs，制定partition数 spark-submit --class cs .ucla .edu .bwaspark .BWAMEMSpark --master spark://maste
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1.art生成模拟序列： art_illumina -ss HS20 -i GRCH38BWAindex/GRCH38chr1L3556522.fna -l 100 -c 10000000 -o g38L100c10000000Nhs20
2.上传到hdfs，制定partition数 spark-submit --class cs.ucla.edu.bwaspark.BWAMEMSpark --master spark://masterIP:7077 /home/hadoop/xubo/tools/cloud-scale-bwamem-0.2.1/target/cloud-scale-bwamem-0.2.0-assembly.jar upload-fastq 0 21 g38L100c10000000Nhs20.fq /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.fastq
masterIP为真实IP 3.使用cs-bwamem进行匹配 spark-submit --executor-memory 4g --class cs.ucla.edu.bwaspark.BWAMEMSpark --total-executor-cores 20 --master spark://masterIP:7077 --conf spark.driver.host=masterIP --conf spark.driver.cores=4 --conf spark.driver.maxResultSize=4g --conf spark.storage.memoryFraction=0.7 --conf spark.akka.threads=2 --conf spark.akka.frameSize=1024 /home/hadoop/xubo/tools/cloud-scale-bwamem-0.2.1/target/cloud-scale-bwamem-0.2.0-assembly.jar cs-bwamem -bfn 1 -bPSW 1 -sbatch 10 -bPSWJNI 1 -oChoice 2 -oPath hdfs://masterIP:9000/xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam -localRef 1 -isSWExtBatched 1 0 GRCH38BWAindex/GRCH38chr1L3556522.fasta /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.fastq
4.将数据进行合并 spark-submit --executor-memory 4g --class cs.ucla.edu.bwaspark.BWAMEMSpark --total-executor-cores 4 --master spark://masterIP:7077 --conf spark.driver.host=masterIP --conf spark.driver.cores=4 --conf spark.driver.maxResultSize=6g --conf spark.storage.memoryFraction=0.7 --conf spark.akka.threads=2 --conf spark.akka.frameSize=1024 /home/hadoop/xubo/tools/cloud-scale-bwamem-0.2.1/target/cloud-scale-bwamem-0.2.0-assembly.jar merge hdfs://masterIP:9000 /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.merge.adam
5.统计数量 分析：distinct显示没有重复的数据 参考： https://github.com/ytchen0323/cloud-scale-bwamem/blob/453a4178cd6c3fb3a0fe99df816e6cd7df521b95/src/main/scala/cs/ucla/edu/bwaspark/Usage.scala
附录： +--------------------+---------+---------+----+------------+--------------------+--------------------+-----+---------------------+-------------------+----------+----------+----------+----------+-----------+------------+-------------------------+-------------+------------------+------------------+----------------+------------------+----------------------+--------------------+--------+--------------------+---------------+---------------------------+----------------------+-----------------------+--------------------+----------------------+------------------+------------------------------------+-------------------+-----------------------+-----------------+------------------+----------------+----------+
| contig| start| end|mapq| readName| sequence| qual|cigar|basesTrimmedFromStart|basesTrimmedFromEnd|readPaired|properPair|readMapped|mateMapped|firstOfPair|secondOfPair|failedVendorQualityChecks|duplicateRead|readNegativeStrand|mateNegativeStrand|primaryAlignment|secondaryAlignment|supplementaryAlignment|mismatchingPositions|origQual| attributes|recordGroupName|recordGroupSequencingCenter|recordGroupDescription|recordGroupRunDateEpoch|recordGroupFlowOrder|recordGroupKeySequence|recordGroupLibrary|recordGroupPredictedMedianInsertSize|recordGroupPlatform|recordGroupPlatformUnit|recordGroupSample|mateAlignmentStart|mateAlignmentEnd|mateContig|
+--------------------+---------+---------+----+------------+--------------------+--------------------+-----+---------------------+-------------------+----------+----------+----------+----------+-----------+------------+-------------------------+-------------+------------------+------------------+----------------+------------------+----------------------+--------------------+--------+--------------------+---------------+---------------------------+----------------------+-----------------------+--------------------+----------------------+------------------+------------------------------------+-------------------+-----------------------+-----------------+------------------+----------------+----------+
|[chr1,248956422,n...| 14809719| 14809819| 60|chr1-6811129|CATGTACAGTGCTCGCC...|CEDA8DA@E<DDED.DE...| 100M| 0| 0| false| false| true| false| false| false| false| false| true| false| true| false| false| 34T46C18| null|NM:i:2 AS:i:90 XS...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...| 80256345| 80256445| 60|chr1-6811128|AGTAGGCTTGGAGAAGA...|D?BCED>D=@DDEC9CF...| 100M| 0| 0| false| false| true| false| false| false| false| false| true| false| true| false| false| 100| null|NM:i:0 AS:i:100 X...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|173354132|173354232| 60|chr1-6811126|AGCACAATCAGAAATAA...|?@@FFDFF2?HHHJ3JJ...| 100M| 0| 0| false| false| true| false| false| false| false| false| false| false| true| false| false| 29T70| null|NM:i:1 AS:i:95 XS...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...| 67191506| 67191606| 60|chr1-6811125|CATTCCCATTGGCTTTT...|?C@F=DEFHHHHHFHIH...| 100M| 0| 0| false| false| true| false| false| false| false| false| false| false| true| false| false| 100| null|NM:i:0 AS:i:100 X...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|143209655|143209755| 5|chr1-6811124|ATTCCATTTGATGACAA...|D5>D:DBCCAC5>,(AC...| 100M| 0| 0| false| false| true| false| false| false| false| false| true| false| true| false| false| 31A44C23| null|NM:i:2 AS:i:90 XS...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|125183587|125183687| 0|chr1-6811124|ATTCCATTTGATGACAA...|D5>D:DBCCAC5>,(AC...| 100M| 0| 0| false| false| true| false| false| false| false| false| true| false| false| true| false| 31A0A43C23| null|NM:i:3 AS:i:85 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|125166941|125167041| 0|chr1-6811124|ATTCCATTTGATGACAA...|D5>D:DBCCAC5>,n...|125181832|125181932| 0|chr1-6811124|ATTCCATTTGATGACAA...|D5>D:DBCCAC5>,n...|143271137|143271237| 0|chr1-6811124|TGGAATCATGATCAAAT...|C@CFFFFDGH:HAJJIJ...| 100M| 0| 0| false| false| true| false| false| false| false| false| false| false| false| true| false| 23G43T0T31| null|NM:i:3 AS:i:85 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|143211045|143211145| 0|chr1-6811124|ATTCCATTTGATGACAA...|D5>D:DBCCAC5>,(AC...| 100M| 0| 0| false| false| true| false| false| false| false| false| true| false| false| true| false| 27A3A0A43C23| null|NM:i:4 AS:i:80 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|143189224|143189324| 0|chr1-6811124|TGGAATCATGATCAAAT...|C@CFFFFDGH:HAJJIJ...| 100M| 0| 0| false| false| true| false| false| false| false| false| false| false| false| true| false| 23G22G20T0T31| null|NM:i:4 AS:i:80 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|143233259|143233359| 0|chr1-6811124|TGGAATCATGATCAAAT...|C@CFFFFDGH:HAJJIJ...| 100M| 0| 0| false| false| true| false| false| false| false| false| false| false| false| true| false| 6T16G43T0T31| null|NM:i:4 AS:i:80 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|143274817|143274917| 0|chr1-6811124|TGGAATCATGATCAAAT...|C@CFFFFDGH:HAJJIJ...| 100M| 0| 0| false| false| true| false| false| false| false| false| false| false| false| true| false| 23G14T28T0T31| null|NM:i:4 AS:i:80 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|143215364|143215464| 0|chr1-6811124|TGGAATCATGATCAAAT...|C@CFFFFDGH:HAJJIJ...| 100M| 0| 0| false| false| true| false| false| false| false| false| false| false| false| true| false| 6T16G43T0T31| null|NM:i:4 AS:i:80 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|125180499|125180599| 0|chr1-6811124|ATTCCATTTGATGACAA...|D5>D:DBCCAC5>,(AC...| 100M| 0| 0| false| false| true| false| false| false| false| false| true| false| false| true| false| 31A0A43C16A6| null|NM:i:4 AS:i:80 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|143267274|143267374| 0|chr1-6811124|TGGAATCATGATCAAAT...|C@CFFFFDGH:HAJJIJ...| 100M| 0| 0| false| false| true| false| false| false| false| false| false| false| false| true| false| 6T16G43T0T31| null|NM:i:4 AS:i:80 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|143226169|143226269| 0|chr1-6811124|TGGAATCATGATCAAAT...|C@CFFFFDGH:HAJJIJ...| 100M| 0| 0| false| false| true| false| false| false| false| false| false| false| false| true| false| 23G14T28T0T31| null|NM:i:4 AS:i:80 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|143264022|143264122| 0|chr1-6811124|TGGAATCATGATCAAAT...|C@CFFFFDGH:HAJJIJ...| 100M| 0| 0| false| false| true| false| false| false| false| false| false| false| false| true| false| 6T16G43T0T31| null|NM:i:4 AS:i:80 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|143223869|143223969| 0|chr1-6811124|TGGAATCATGATCAAAT...|C@CFFFFDGH:HAJJIJ...| 100M| 0| 0| false| false| true| false| false| false| false| false| false| false| false| true| false| 23G25C17T0T31| null|NM:i:4 AS:i:80 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
|[chr1,n...|143258530|143258630| 0|chr1-6811124|ATTCCATTTGATGACAA...|D5>D:DBCCAC5>,(AC...| 100M| 0| 0| false| false| true| false| false| false| false| false| true| false| false| true| false| 31A0A17G25C23| null|NM:i:4 AS:i:80 RG...| foo| null| null| null| null| null| null| null| null| null| bar| null| null| null|
+--------------------+---------+---------+----+------------+--------------------+--------------------+-----+---------------------+-------------------+----------+----------+----------+----------+-----------+------------+-------------------------+-------------+------------------+------------------+----------------+------------------+----------------------+--------------------+--------+--------------------+---------------+---------------------------+----------------------+-----------------------+--------------------+----------------------+------------------+------------------------------------+-------------------+-----------------------+-----------------+------------------+----------------+----------+
only showing top 20 rows
（2）合并前后数据展示： hadoop@Master:~$ hadoop fs -du -h /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/0
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/1
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/10
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/100
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/101
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/102
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/103
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/104
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/105
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/106
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/107
9.6 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/108
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/109
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/11
9.7 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/110
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/111
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/112
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/113
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/114
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/115
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/116
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/117
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/118
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/119
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/12
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/120
10.1 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/121
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/122
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/123
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/124
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/125
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/126
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/127
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/128
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/129
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/13
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/130
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/131
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/132
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/133
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/134
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/135
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/136
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/137
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/138
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/139
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/14
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/140
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/141
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/142
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/143
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/144
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/145
10.1 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/146
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/147
1.6 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/148
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/15
9.7 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/16
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/17
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/18
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/19
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/2
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/20
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/21
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/22
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/23
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/24
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/25
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/26
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/27
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/28
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/29
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/3
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/30
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/31
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/32
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/33
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/34
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/35
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/36
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/37
10.1 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/38
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/39
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/4
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/40
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/41
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/42
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/43
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/44
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/45
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/46
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/47
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/48
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/49
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/5
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/50
10.1 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/51
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/52
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/53
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/54
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/55
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/56
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/57
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/58
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/59
9.9 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/6
10.0 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/60
9.8 M /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.adam/61
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hadoop@Master:~$ hadoop fs -du -h /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.merge.adam
du: `/xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.merge.adam': No such file or directory
hadoop@Master:~$ hadoop fs -du -h /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.merge.adam
0 /xubo/data/alignment/cs-bwamem/fastq/g38L100c10000000Nhs20.merge.adam/_SUCCESS
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hadoop@Master:~$
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