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“Non Zero Exit Status” R 3.0.1 'XML' and &am

发布时间:2020-12-16 06:34:40 所属栏目:百科 来源:网络整理
导读:I am having a bit of trouble installing XML and or RCurl on my Ubuntu machine 13.10. I performed all sudo update and upgrades today. I am trying to use rattle for R. I am unable to install 'XML' which is required for the use of rattle. Thi

I am having a bit of trouble installing XML and or RCurl on my Ubuntu machine 13.10. I performed all sudo update and upgrades today.

I am trying to use rattle for R. I am unable to install 'XML' which is required for the use of rattle. This is pretty much the same question that was askedright herejust a year later and a different OS. Here are the error messages that I am getting back:

> install.packages("RCurl") Installing package into ‘/home/steven/R/x86_64-pc-linux-gnu-library/3.0 (as lib is unspecified) trying URL 'http://cran.rstudio.com/src/contrib/RCurl_1.95-4.1.tar.gz' Content type 'application/x-gzip' length 870915 bytes (850 Kb) opened URL ================================================== downloaded Kb * installing *source* package RCurl ... ** RCurl successfully unpacked and MD5 sums checked checking for curl-config... no Cannot find curl-config ERROR: configuration failed for RCurl * removing ‘/home/steven/R/x86_64-pc-linux-gnu-library/3.0/RCurl Warning in install.packages : installation of RCurl had non-zero exit status The downloaded source packages are in ‘/tmp/RtmpUwBkbS/downloaded_packages > install.packages("XML") 'http://cran.rstudio.com/src/contrib/XML_3.98-1.1.tar.gz' 1582216 bytes (1.5 Mb) opened URL ================================================== downloaded Mb * installing *source* package XML ... ** package XML successfully unpacked for gcc... gcc checking for C compiler default output file name... rm: cannot remove 'a.out.dSYM': Is a directory a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for sed... /bin/sed checking for pkg-config... /usr/bin/pkg-config checking for xml2-config... Cannot find xml2-config ERROR: configuration failed package XML * removing ‘/home/steven/R/x86_64-pc-linux-gnu-library/3.0/XML package XML had non-zero RtmpUwBkbS/downloaded_packages
To install curl and xml on ubuntu. Run

sudo apt-get install libcurl4-openssl-dev sudo apt-get install libxml2-dev

The error messages on package install in R indicate that the curl and xml libraries are not present or cannot be found.

In CentOS 6+ you can do it using

sudo yum -y install curl sudo yum -y install libcurl libcurl-devel
You also needsudo yum -y install libxml2 libxml2-devel

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